Studies ago whole genome sequencing from Asian, African and European subgroups has revealed population specific variation and disease, which isolation differences each geographical (22, 23). From this knowledge, it led to this study of an analysis of whole genome sequencing of Thai male, we expect whole genome variation discovery and understand genome structure of Thai, and we compare genetic variation between Thai with other population in order to know the relationship genetic variation among population. We generated Thai genome database and designed a computational genome analysis pipeline because currently without goal standard method for genome analysis. Addition we designed quality control (QC) for filtering of high-quality data and increase accuracy of base call.